The pmemd.cuda GPU Implementation
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The pmemd.cuda GPU Implementation
Amber Hardware & Software Configurations
GPU-Accelerated Molecular Dynamics and Free Energy Methods in Amber18: Performance Enhancements and New Features
Performance of Amber 18, NAMD version 2.13 and GROMACS 2018 measured as
Improving GPU Utilization in Kubernetes
Schematic representation of the main components of the MIST library.
Toward Fast and Accurate Binding Affinity Prediction with pmemdGTI: An Efficient Implementation of GPU-Accelerated Thermodynamic Integration.
GPU-Accelerated All-atom Particle-Mesh Ewald Continuous Constant pH Molecular Dynamics in Amber
GUI and output for statistical comparison of dynamic motion
GPU-Accelerated Implementation of Continuous Constant pH Molecular Dynamics in Amber: pKa Predictions with Single-pH Simulations
GPU-Accelerated All-atom Particle-Mesh Ewald Continuous Constant pH Molecular Dynamics in Amber
Statistical machine learning for comparative protein dynamics with the DROIDS/maxDemon software pipeline - ScienceDirect
Automation of absolute protein-ligand binding free energy calculations for docking refinement and compound evaluation
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